Weird issue that I believe started after most recent update (v6.10).
I have a skel directory containing just an non-configured version of Wordpress. When creating a new virtual server with this server template, it works fine except for two strange things.
index.php is missing. index.html (the under construction page) is present.
I’ve fixed the individual installs by removing index.html and adding a copy of WP’s index.php.
Any thoughts on why this could be happening?