You can disable from starting if you’re sure you don’t need it. The easiest way would be in Webmin -> System -> Bootup and Shutdown. I wouldn’t recommend it without some clear reason to do so (which is kind of hard to come up with); but it’s your server, not mine.
It seems from your reply that it’s normal to have 2 versions running simultaneously. As long as this is a normal behavior and does not cause any issues, then I’ll just leave it be. Just wanted to know if this is typical for everyone who uses Virtualmin.
Yes, it’s quite a common thing to have multiple PHP versions, and to select which one is used per-domain. It’s not strictly necessary unless one or another domain needs a certain version of PHP; but it’s not at all unusual, either.