CPanel imports with multiple domains - no SSL option

SYSTEM INFORMATION
OS type and version AlmaLinux 9.3
Webmin version 2.105
Usermin version 2.005
Virtualmin version 7.8.2
Theme version 21.09.5
Package updates 12 package updates are available

When importing cpanel accounts with domain.org.uk and then domain.org only one domain gets SSL options. One seems to become a parent.
Is it best to split them into separate instances? I have tried adding the list of separate domains to Lets Encrypt but that hasnt worked - SSL is issed but doesnt work for the child domain/virtualserver

Any pointers welcome:)

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