There was an issue with Ubuntu (that more recent installers handle) where if mod_php is enabled in Apache, it overrides CGI/FCGID.
If you look in /etc/apache2/mods-enabled/php5.conf – do you see any “SetHandler” lines in there? If so, comment them out, and restart Apache – that should do the trick for you!
Thank you, their are indeed some SetHandler lines in the conf file. If I remove those lines, what would the effect be on the existing websites that make use of mod_php? Will I need to go into each one (currently 100+) and manually add in those lines?
Nope, it should continue to work for the other websites.
My recommendation would be to comment out those two lines, restart Apache, then test your other mod_php sites, just to make sure that works as expected. But it should work as needed.