Did virtual package updates module go away?

It’s not in the repo, http://software.virtualmin.com/vm/6/gpl/universal/

Speaking of wbm-security-updates module.

It’s now in core Webmin. You don’t need a separate module for it. There were some links for a while that needed both, but I think they’re all sorted out now. If you’re having problems, it’d be a bug.